Journal Articles
1. Araujo, E. D., Erdogan, F., Neubauer, H., Meneksedag-Erol, D., Manaswiyoungkul, P., Eram, M., Qadree, A., Israelian, J., Orlova, A., Seo, H. S., Suske, T., Pham, H. T. T., Boersma, A., Tangermann, S., Kenner, L., Rulicke, T., Dong, A., Ravichandran, M., Brown, P., Audette, G., Rauscher, S., Dhe-Paganon, S., Moriggl, R., Gunning, P. T. Structural and Functional Consequences of the STAT5B N642H Driver Mutation. Nature Communications, 10: 2517.
2. Meneksedag-Erol, D.; Kizhakkedathu, J. N.; Tang, T.; Uludağ, H. Molecular Dynamics Simulations on Nucleic Acid Binding Polymers Designed to Arrest Thrombosis. ACS Applied Materials & Interfaces 2018, 10, 28399–28411.
3. Meneksedag-Erol, D.; Tang, T.; Uludağ, H. Mechanistic Insights into the Role of Glycosaminoglycans in Delivery of Polymeric Nucleic Acid Nanoparticles by Molecular Dynamics Simulations. Biomaterials 2018, 156, 107-120.
4. Uludağ, H.; Landry, B.; Valencia-Serna, J.; K.C., R.B.; Meneksedag-Erol, D. Current Attempts to Implement siRNA-based RNAi in Leukemia Models. Drug Discovery Today 2016, 21, 1412-1420.
5. Meneksedag-Erol, D.; KC, R. B.; Tang, T.; Uludağ, H. A Delicate Balance When Substituting a Small Hydrophobe onto Low Molecular Weight Polyethylenimine to Improve Its Nucleic Acid Delivery Efficiency. ACS Applied Materials & Interfaces 2015, 7, 24822−24832.
6. Meneksedag-Erol, D.; Tang, T.; Uludağ, H. Probing the Effect of miRNA on siRNA−PEI Polyplexes. Journal of Physical Chemistry B 2015, 119, 5475−5486.
7. Meneksedag-Erol, D.; Tang, T.; Uludağ, H. Molecular Modeling of Polynucleotide Complexes. Biomaterials 2014, 35, 7068-7076.
8. Meneksedag-Erol, D.; Dogan, A.; Kanlikilicer, P.; Ozkirimli E. Communication between the Active Site and the Allosteric Site in Class A Beta-lactamases.. Computational Biology and Chemistry 2013, 43, 1-10.
Book Chapters
1. Meneksedag-Erol, D.; Rauscher, S. Atomistic Simulation Tools to Study Protein Self-aggregation. In: McManus J. (eds.) Protein Self-Assembly. Methods in Molecular Biology, Volume 2039, 2019, 243-262.
2. Meneksedag-Erol, D.; Sun, C.; Tang, T.; Uludağ, H. Molecular Dynamics Simulations of Polyplexes and Lipoplexes Employed in Gene Delivery. In: Prokop A. et al. (eds.), Intracellular Delivery II, Fundamental Biomedical Technologies Volume 7, 2014, 277-311.