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Online Resources in Biology (by topic)

Anatomy

Molecular biology & biochemistry (amino acids, proteins, etc.)

  • Binding Database
    BindingDB contains 15,000 small molecule ligands with 30,000 measured affinities to proteins presented in the PDB.
  • BRENDA: Enzyme Database
    Free for academic use but registration is required (recognizes users within Concordia IP range). Contains data on the function of 3,500 enzymes with references to the literature
  • Chemistry of Amino Acids
    Dictionary on the structure and chemistry of amino acids
  • Entrez Protein
    Retrieves protein information (inluding sequences and annotations) from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq.
  • ExPASy
    This enzyme database covers catalytic activity, cofactors, and associated diseases
  • Medical Biochemistry Page
    Encyclopedic dictionary of major biochemical concepts
  • MMDB (Molecular Modeling DataBase): Entrez Structure database
    A subset of three-dimensional structures obtained from the Protein Data Bank
  • Proteopedia - 3D Encyclopedia of proteins
    Encyclopedia on the structure and function of proteins, RNA, DNA, and other macromolecules, and their assemblies and interactions with small molecules.
  • RCSB Protein Data Bank
    Repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids, and their relationships to sequence, function, and disease.
  • UniProt
    Protein sequence and functional information.

Botany & Ethnobotany

Cell biology

Amazing Cells
Activities and videos about the structure and function of organelles and communication on a molecular level.

Ecology, biodiversity & environment

  • AmphibiaWeb
    Provides information on amphibian declines, conservation, natural history, and taxonomy.
  • Biodiversity Heritage Library
    Digitized journals and books in biodiversity spanning 200 years from the collections of ten major natural history museum libraries, botanical libraries, and research institutions.
  • Convention on Biological Diversity - Technical Series
    Online books with information on the conservation of biological diversity and sustainability.
  • Encyclopedia of Earth
    A free encyclopedia with a wide range of scholarly articles on biodiversity, ecology, zoology, climate change, pollution, etc.
  • Encyclopedia of Life
    Provides biodiversity knowledge about all known species, including their taxonomy, geographic distribution, collections, genetics, evolutionary history, morphology, behavior, ecological relationships, and importance for human well being.
  • Freshwater Ecoregions of the World
    Provides ecoregion maps of almost all freshwater habitats on Earth together with associated species data.
  • Grasshoppers: Their Biology, Identification and Management
    Comprehensive information on the biology, ecology, identification and management of grasshoppers and Mormon crickets in North America.
  • GreenFILE
    Freely accessible research database focusing on the relationship between human beings and the environment (subjects cover law, agriculture, education, health, technology, etc.) Contains scholarly and general interest titles, government documents, and reports.
  • Grzimek's Animal Life Encyclopedia
    This is a revised and updated edition of one of the most authoritative and comprehensive sources on the world's animals. This edition covers all types of animals in geographic areas around the world. Online access restricted to Concordia users.
  • IUCN Red List of Threatened Species Database
    Provides taxonomic, conservation status and distribution information on plants and animals that are extinct, at risk of extinction, or near threatened.
  • NatureServe
    Provides taxonomic, habitat, distribution, ecological, conservation data and references to animals and plants in the Americas.
  • OBIS: Ocean Biogeographic Information System
    Data on geographic distributions of many maring organisms.
  • Species information - Fish and Wildlife Service (USA)
    Provides information about plant and animal species, updates on legislation and policy regarding species management, and details about species conservation status. Site sections include Endangered Species, Birds, Invasive Species, Pollinators, The Image Library, and Wildlife Fact Sheets.
  • State of the World's Birds
    Outlines why birds and biodiversity are important, examines the changing state of the world’s birds, why birds are declining, and what can be done to improve their status.
  • Tree of Life Web Project
    Collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Contains pictures, text, and other information for species living or extinct and the hierarchy of life, phylogeny and evolution.
  • WHISPers: wildlife health data portal
    WHISPers is a partner-driven, web-based repository for sharing basic information about historic and ongoing wildlife mortality (death) and morbidity (illness) events in North America.

Entomology

Enzymes

  • BRENDA: Enzyme Database
    Free for academic use but registration is required (recognizes users within Concordia IP range). Contains data on the function of 3,500 enzymes with references to the literature
  • Dictionary of Organic Compounds
    Vanier Reference QD 476 D5 1996. Multi-volume set with structural, physical, and functional data. It provides references to synthesis and isolation information.
  • Enzyme Handbook
    Vanier Reference QP 601 E5158 1990. Multi-volume set with data on substrate and product spectrum, inhibitors, cofactors, kinetics, etc., for 3,000 enzymes. IMPORTANT: arranged by class of enzymes with data sheets ordered by Enzyme Classification (EC) number. You will have to go to BRENDA or ExPASy first to find this number. An example of an EC number is 1.3.99.1 (Succinate dehydrogenase).
  • ExPASy
    This enzyme database covers catalytic activity, cofactors, and associated diseases
  • Merck Index
    Vanier Reference Desk RS 51 M4. Physical and structural data as well as information on biological importance. Provides literature references to chemical, biological and pharmacological information.
  • Methods in Enzymology
    Online resource (recognizes users within Concordia IP range). Useful for methodologies. Also available in print (Vanier Reference QP 601 M5). A CD-ROM index to search the entire set is found at Vanier workstation 141. Remember to take down the relevant volume and page number.
  • SciFinder
    Major index to the chemical literature and includes structural diagrams, physical data, and reaction information. If you are having difficulty finding enzyme properties, such as Vmax or Km, search for journal articles on your enzyme in SciFinder Scholar, Medline , or BIOSIS.

Genetics & medicine

  • Amazing Cells
    Activities and videos about the structure and function of organelles and communication on a molecular level.
  • Binding Database
    BindingDB contains 15,000 small molecule ligands with 30,000 measured affinities to proteins presented in the PDB.
  • Biology Animation Library
    Animated tutorials about certain genetic concepts such as cloning.
  • ClustalW2: align sequences
    General purpose multiple sequence alignment program for DNA or proteins. It produces multiple sequence alignments of divergent sequences and calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen.
  • EcoCyc: Encyclopedia of Escherichia coli K-12 Genes and Metabolism
    Database that describes the complete genome sequence of E. coli K-12 MG1655, the nucleotide position and function of every its genes, several types of cellular regulation, and metabolic pathways.
  • EMBL European Nucleotide Archive
    Information relating to experimental workflows that are based around nucleotide sequencing.
  • Entrez Genome
    Provides views for genomes, complete chromosomes, sequence maps with contigs, and integrated genetic and physical maps for Archaea, Bacteria, Eukaryotae, Viruses, Viroids
  • Entrez Nucleotide
    Collection of sequences from over 100,000 species and from several sources, including GenBank, RefSeq, and PDB.
  • Entrez Protein
    Retrieves protein information (inluding sequences and annotations) from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq.
  • FlyBase
    Database of Drosophila genes and genomes
  • Medical Biochemistry Page
    Encyclopedic dictionary of major biochemical concepts
  • Online Mendelian Inheritance in Man (OMIM)
    Database of human genes and genetic disorders
  • RCSB Protein Data Bank
    Repository of information about the 3D structures of large biological molecules, including proteins and nucleic acids, and their relationships to sequence, function, and disease.
  • Talking Glossary of Genetic Terms
    Definitions, images, animations, and videos of geneticists describing terms.
  • UCSC Genome Browser
    This site contains the reference sequence and working draft assemblies for a large collection of genomes. Gives annotations, expression, homology and other information on groups of genes and maps your sequence to the genome.
  • WikiGenes
    Collaborative encyclopedia in the biomedical sciences.
  • WormBase
    Contains the genetics, genomics and biology of C. elegans and some related nematodes

Microbiology & immunology

Zoology

  • AmphibiaWeb
    Provides information on amphibian declines, conservation, natural history, and taxonomy.
  • Audubon's Birds of America
    The University of Pittsburgh digitized rare complete set of John James Audubon’s Birds of America accompanied by his Ornithological Biography.
  • Coral Kingdom
     
  • Encyclopedia of Earth
    A free encyclopedia with a wide range of scholarly articles on biodiversity, ecology, zoology, climate change, pollution, etc.
  • Encyclopedia of Life
    Provides biodiversity knowledge about all known species, including their taxonomy, geographic distribution, collections, genetics, evolutionary history, morphology, behavior, ecological relationships, and importance for human well being.
  • Grzimek's Animal Life Encyclopedia
    This is a revised and updated edition of one of the most authoritative and comprehensive sources on the world's animals. This edition covers all types of animals in geographic areas around the world. Online access restricted to Concordia users.
  • John James Audubon's Birds of America
    Online version of John James Audubon's Birds of America. It is from the 1840 edition of Audubon's complete seven volume text, and presents Audubon's images and original text descriptions. Bird species can be found listed alphabetically, or categorized by family.
  • Metcalf Collection: resource on cicadas, leafhoppers, planthoppers, spittlebus and treehoppers
    Information on cicadas, leafhoppers, planthoppers, spittlebugs, and treehoppers, including a searchable database for retrieving literature on Auchenorrhyncha.
  • NatureServe
    Provides taxonomic, habitat, distribution, ecological, conservation data and references to animals and plants in the Americas.
  • Species information - Fish and Wildlife Service (USA)
    Provides information about plant and animal species, updates on legislation and policy regarding species management, and details about species conservation status. Site sections include Endangered Species, Birds, Invasive Species, Pollinators, The Image Library, and Wildlife Fact Sheets.
  • State of the World's Birds
    Outlines why birds and biodiversity are important, examines the changing state of the world’s birds, why birds are declining, and what can be done to improve their status.
  • Tree of Life Web Project
    Collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Contains pictures, text, and other information for species living or extinct and the hierarchy of life, phylogeny and evolution.
  • Western Soundscape Archive
    Audio recordings of animals and environments throughout the Western United States and the Arctic National Wildlife Refuge.
  • WoRMS - World Register of Marine Species
    List of names of all marine species globally
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